I have some cd’s that are recorded live. Some songs have a introduction to the song and then the song. The problem is the intro. and the song are seperate tracks, so when it is set on shuffle, you get one or the other, but not both. Is there a way to make 2 tracks into 1 track?

Not in the Fuze. You ca download Audacity for Free and combine the 2 files into 1 using that and then export it to wav, or mp3 or any number of different file types (make sure you get the LAME mp3 Plugin if you wanna use mp3)